PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016445672.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17095.6 Da    PI: 10.3433
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016445672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.24.5e-181656242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +ien+ nrqvtfsk rng++KKA+EL v+++aev +i+  +
  XP_016445672.1 16 KIENQNNRQVTFSKCRNGVFKKANELAVMTGAEVGIIVCPQ 56
                    79***********************************9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-21166IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.521767IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-15929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-21978IPR002100Transcription factor, MADS-box
PfamPF003195.1E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSTRRIKLRK SVRLAKIENQ NNRQVTFSKC RNGVFKKANE LAVMTGAEVG IIVCPQGSKP  60
YSFGHPNVNE TINKYVGKER PPSPSGIDDN KLKKMNKNVE SQQEWFKGPI EKMNYTKASM  120
LNGGLEDLLL KVKNYGAEHG YSYENGKWKA E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620199.11e-109PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016445672.11e-109PREDICTED: agamous-like MADS-box protein AGL62
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2405622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-22AGAMOUS-like 61